Ok, so I know this has been dead for a good bit of time now, but I figured I should at least share a bit of a work around I found to this issue. (Though most people have problem figured this out already) Before you start the game up, unplug your keyboard, as the game starts up it will recognize the controller as the gamepad, at which point you can then safely plug your keyboard back in. The game will then recognize the use of the controller as the gamepad, and not mistake your keyboard as one.
