I have the issue with my sims leaving their vehicles in parking spaces in town, if they walked or ran from the original community lot to others, then went home without needing their vehicle. I always look for it where my sim went first, and drag it into their inventory, the place it on the parking spot at home.
A day or two ago, my sims' speedboat was left in the water while they were snorkeling, without be transferred to their personal inventory as usually happens. When they went home, they took a water taxi instead of the boat. I couldn't pull it into their personal inventory, and resetting the boat trailer in their yard didn't bring it back. So I went back to where the boat was in the water, and reset it. That worked.
If you know where your sim went the last time they used the motorcycle, you might find it there in a parking lot. If so, you should be able to either pull it into your sim's inventory, or reset it with NRaas Master Controller, which would put it back in the parking spot at their dorm or house. If one of the roommates has it, what @puzzlezaddict said will work, but you can select all of the roommates at once by clicking on the map tag of the dorm or house to open the mod. I don't have my game open, so can't look at the steps, but I think it would be NRaas > Master Controller > Sim > Transfer From, then in the panel to select which sim, select all except your own sim, then select your sim as the destination.