Collectibles (crystals, metals, fossils) never respawn after patch

Hello. Collectibles (fossils, crystals, and metals) are completely broken across ALL worlds (tested in Oasis Springs and Willow Creek).

After collecting them for the first time, they NEVER spawn or respawn again. Even after a full in-game week, staying for more than 4 hours on the lot, and waiting past the 24-hour cycle, the nodes remain completely empty and dead.

I tested this on a completely clean game: I removed my entire Mods folder and cleared the localthumbcache.package file, but the bug still persists. Please fix this, it completely breaks the gameplay for challenges.