Have you looked in your valuables? You can still modify weapons and armor that are in valuables, but they won't move to your main inventory. So perhaps they were in valuables when you stored them, and went back to valuables when you withdrew them?
For me, nope, first place I looked. The weight is being accounted for, but it's just not "there" in the inventory to click on. Missing a line of code or something.
At this point, I can't get ANYTHING out of the storage chest. Same deal as reported...shows in inventory until I close the chest but nothing actually makes it to my inventory. Two rare daggers...lost for all purposes.
Have you tried repairing the game?
