Re: Mass Effect 2 LE: New Game No Bonus Power Selection At Start

Unlocking bonus powers in ME2 doesn't carry over to ME3, you must re-unlock them in ME3 and they will be available at the start for subsequent re-imports of ME3 saves.

EDIT: Perhaps I misread, are you starting a re-import of ME2? If so I'd bet this is related to the known issue with ME2 Advanced Training