Experiencing this today with the planters in the world of Moonwood Mill
In addition, often times the plants are showing as dirt piles and unable to be interacted with, even though the plant should be in season
Edit to add: apparently the floating fruits are interactable, but the sim route-fails
Sorry to double post but this is a similar issue
You can see there's like a "ghost" mushroom which can't be seen but can be interacted with
The sim route fails however when you try to interact
Same happens with many other types of plants
