The only fix I found was to fully delete ME3, all my ME3 saves, and the saves backed up thru PS+.
Basically you have to have a fresh install to fix. It worked for me, but I got burned out before I got all the powers back. I’m sorry I don’t have a better answer.
Hey, I randomly started a new character in me1 in the legendary ps4 edition and you get to choose a bonus power when starting a new character, saved that game for later and went back onto my main character in me3, I thought I'd check to see if anything had changed with the bonus powers and there all available to my main character again.
So hopefully that works for everyone else that encounters this problem in the future.
