Conspiracy Theory
Ok, here's another weird coincidence. So Alec has been working on these crazy experimental implants (with Ellen) made to keep Ellen alive when she should be dead. During this time Miranda, Wilson, an...
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They probably stole ideas from each other and other people working on implants, I'd suspect.
I think I got it now.
The reapers are behind it all in the end. The only reason Alec and Ellen managed to develop the tech they did (implant and AI) is because the Reapers let them.
Then the reapers found out about the Initiative and thought that starting all over with a new group of people would be a good idea. This way the new society in Andromeda would incorporate AI as a normal part of society before returning to the Milky Way to repopulate with AI controlled living beings.
Of course then Shepard screwed things up and took over the Reapers or killed them and now all bets are off. Jien Garcen was murdered by a Reaper agent as she was finding out too much, but this Reaper agent doesn't realise the Reapers are bust.
All SAMs are just unwittingly servants of the Reaper agent. But who that exactly is, well, that remains to be seen....
<quietly puts tin foil hat away>
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