Yeah, I've also encountered the issue that if the Rachni Queen is saved the Aralakh Company war asset disappears from the menu entirely. This was not the behavior in the original ME3, where it remained in the menu and a new entry was added describing the company's ultimate fate against the Rachni and leaving the +25 for Grunt leading Aralakh Company and the +25 if Grunt was loyal.
It's possible that this change was intended, given that the bonus for Grunt leading Aralakh Company doesn't make sense if the company no longer exists. If that was the case though I'm not sure why they didn't simply adjust the amount that is subtracted when Aralakh Company is destroyed and leave the war asset entry in the menu, as now you can no longer read the extra description about the company's fate.
And that's not counting the War Assets that are unused but in the game:
https://www.tapatalk.com/groups/me3explorer/master-list-of-deleted-unused-bugged-content-t1172.html
