CC in subfolders?

I tested a few mods today by renaming the package files (to just initials) and placing them with their script files one subfolder down (new subfolder in my Mods folder with creators name as the folder name) and they all appear to be working fine after testing in game. It keeps things very tidy and means I can update with ease after any new patch. I have a small exercise book where I write down all the mods I use and their new smaller file names. I don't change the script file names at all, but they are together in the same subfolder as the package file they relate to. It's so tidy!!!