@Dan_Urios Where exactly did you put the user data? It's not supposed to go into the game's program files at all. For both an Origin and a Steam install, the files go into Documents > Electronic Arts > The Sims 4, and in fact Origin and Steam installs read the same folder. I understand the file structure may be more complicated than that given your Linux setup, but the principle is the same: Sims 4 will look for user data in the one location regardless of the type of install.
In case you're not sure where the game is storing data now, you can check in-game once Sims 4 is running again. You'll need to remove the folders from wherever you put them, but that would be the next step anyway.
https://sims4.crinrict.com/eng/2018/07/how-to-find-your-user-folder/
Anyway, if the game works once you've removed those folders, it should have created a new Mods folder; please transfer a few of your mods to that folder (not the Mods folder itself; the point is to get the game to create a new one) and test again. If the game still loads, you can use the 50/50 method to sort through your mods and custom content:
https://modthesims.info/wiki.php?title=Game_Help:Finding_Problem_Custom_Content#The_50.25_Method
If the mods you test stop Sims 4 from loading, remove those and test one or two others. If those don't work either, please download a fresh copy of one mod that's confirmed compatible with patch 1.93 and test it. If that works, it's possible that your existing mods were corrupted at some point, and you may need to redownload everything.
Once you've sorted out the contents of the Mods folder, you can move over the contents of saves and Tray. Here again, keep the new folders the game has created and only move over the files themselves.