I am having the same problem with editing some relationships (although mine could be mod related). I started playing the Behr household and used genetics to make their parents and grandmother. Some of the girls relationships worked out and others the game did not recognize them as related to their new family.
Last year when I had the same problem, I used the cheat code to manually edit my sims relationships when EA culled my children's father (I had to recreate him and used the cheat for the game to recognize the relationship).
In order for the cheat code to work, you will first need to get the unique ID for each sim using a cheat. Once the sim ID popped up on my screen, I took a screenshot of each sims ID and typed it up manually in the Notepad app. In my situation I needed the ID of the father and child. Once I copied the code, I got the other cheat code that will edit the relationships of my sims and pasted that in the same note. I found it easier to type up the cheat code whilst still in the Notepad app and copy/pasted it into the cheat console.
You will need to enter the code - once for the game to recognize the child as belonging to the father and again for father belonging to the child. Unfortunately, you can only edit relationships for parents, children, grandparents, grandchildren and a couple other relationship types. (More info found on website below)
You can find the cheat codes on the Sim's VIP:
Sims ID cheat: http://simsvip.com/sims-4-cheats-codes/#SimID
Relationship cheat: http://simsvip.com/sims-4-cheats-codes/#Relationships
I hope this makes sense - I am a bit dense and it took me a little bit to figure out - so if you need any help, please don't hesitate to ask :)
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