As was stated above with 4.0 all active Missions where set back, this is not an bug an will not be changed.
I have a reply from a person who answered my ticket that stated otherwise. He said it was a bug to be addressed later. I suppose that was a big lie. If they announced it prior to 4.0, why didn't they promote it batter than just kinda slide it in some where. It's just plan dirty. Do you have a link to a post made prior to 4.0 stating such a thing? All I find are people saying it was said that they made after 4.0. I have yet to find the original information that says it prior to the release of KOTFE.
I don't know where they announced it befor 4.0 but its in the Patch notes to 4.0:
http://www.swtor.com/patchnotes/10202015/game-update-4.0-knights-fallen-empire-early-access
Note: Due to the number and type of changes made, a majority of existing missions will be automatically reset to their starting step when this update goes live.
