Applied options not Saving (Option.ini trick did not work)

(Post 1.121.342.1030 Update)

I booted up my game for the first time since the update, and I got the SDX glitch, which is usually an easy fix. But when it came to turning off the automatic download setting, I'd restart my game and the setting had reverted itself. I did the options.ini trick, and while it did reset my options, my options still aren't staying applied after I restart my game.